Publications

Contribution of rare genetic variation to disease susceptibility in a large Scandinavian myositis cohort.
Bianchi, M., Kozyrev, S., Notarnicola, A., Hultin-Rosenberg, L., Karlsson, Å. et al. (2022). Arthritis & Rheumatology, . vol. 74, ss. 342-352 DOI
Allele frequency spectrum of known ankylosing spondylitis associated variants in a Swedish population.
Mathioudaki, A., Nordin, J., Kastbom, A., Söderkvist, P., Eriksson, P. et al. (2022). Scandinavian Journal of Rheumatology, . vol. 51, ss. 21-24 DOI
Bayesian model and selection signature analyses reveal risk factors for canine atopic dermatitis.
Tengvall, K., Sundström, E., Wang, C., Bergvall, K., Wallerman, O. et al. (2022). Communications Biology, . vol. 5 DOI
Interpretable machine learning identifies paediatric Systemic Lupus Erythematosus subtypes based on gene expression data.
Yones, S., Annett, A., Stoll, P., Diamanti, K., Holmfeldt, L. et al. (2022). Scientific Reports, . vol. 12 DOI
The ABCC4 gene is associated with pyometra in golden retriever dogs.
Arendt, M., Ambrosen, A., Fall, T., Kierczak, M., Tengvall, K. et al. (2021). Scientific Reports, . vol. 11 DOI
Association of Protective HLA-A With HLA-B∗27 Positive Ankylosing Spondylitis.
Nordin, J., Pettersson, M., Hultin Rosenberg, L., Mathioudaki, A., Karlsson, Å. et al. (2021). Frontiers in Genetics, . vol. 12 DOI
Genetic and clinical basis for two distinct subtypes of primary Sjögren's syndrome.
Thorlacius, G., Hultin-Rosenberg, L., Sandling, J., Bianchi, M., Imgenberg-Kreuz, J. et al. (2021). Rheumatology, . vol. 60, ss. 837-848 DOI
A novel canine reference genome resolves genomic architecture and uncovers transcript complexity.
Wang, C., Wallerman, O., Arendt, M., Sundström, E., Karlsson, Å. et al. (2021). Communications Biology, . vol. 4 DOI
A comparative genomics multitool for scientific discovery and conservation.
Genereux, D., Serres, A., Armstrong, J., Johnson, J., Marinescu, V. et al. (2020). Nature, . vol. 587, ss. 240-245 DOI
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.
Gordon, D., Krogan, N. (2020). Science, . vol. 370 DOI
Targeted sequencing reveals the somatic mutation landscape in a Swedish breast cancer cohort.
Mathioudaki, A., Ljungström, V., Melin, M., Arendt, M., Nordin, J. et al. (2020). Scientific Reports, vol. 10 DOI
SweHLA: the high confidence HLA typing bio-resource drawn from 1000 Swedish genomes.
Nordin, J., Ameur, A., Lindblad-Toh, K., Gyllensten, U., Meadows, J. (2020). European Journal of Human Genetics, vol. 28, ss. 627-635 DOI
Common genetic variation in the autoimmune regulator (AIRE) locus is associated with autoimmune Addison's disease in Sweden.
Eriksson, D., Bianchi, M., Landegren, N., Dalin, F., Skov, J. et al. (2018). Scientific Reports, vol. 8 DOI
A potential regulatory region near the EDN3 gene may control both harness racing performance and coat color variation in horses.
Fegraeus, K., Velie, B., Axelsson, J., Ang, R., Hamilton, N. et al. (2018). Physiological Reports, vol. 6 DOI
SETD2 Is Recurrently Mutated in Whole-Exome Sequenced Canine Osteosarcoma.
Sakthikumar, S., Elvers, I., Kim, J., Arendt, M., Thomas, R. et al. (2018). Cancer Research, . vol. 78, ss. 3421-3431 DOI
Dissecting evolution and disease using comparative vertebrate genomics.
Meadows, J., Lindblad-Toh, K. (2017). Nature reviews genetics, vol. 18, ss. 624-636 DOI
Long-term follow-up in primary Sjögren's syndrome reveals differences in clinical presentation between female and male patients.
Sepulveda, J., Kvarnstrom, M., Eriksson, P., Mandl, T., Norheim, K. et al. (2017). Biology of Sex Differences, . vol. 8 DOI
Extended exome sequencing identifies BACH2 as a novel major risk locus for Addison's disease.
Eriksson, D., Bianchi, M., Landegren, N., Nordin, J., Dalin, F. et al. (2016). Journal of Internal Medicine, vol. 286, ss. 595-608 DOI
Absolute quantification reveals the stable transmission of a high copy number variant linked to autoinflammatory disease.
Olsson, M., Kierczak, M., Karlsson, Å., Jablonska, J., Leegwater, P. et al. (2016). BMC Genomics, vol. 17 DOI
cgmisc: Enhanced Genome-wide Association Analyses and Visualisation.
Kierczak, M., Jablonska, J., Forsberg, S., Bianchi, M., Tengvall, K. et al. (2015). Bioinformatics, vol. 31, ss. 3830-3831 DOI
A Simple Repeat Polymorphism in the MITF-M Promoter Is a Key Regulator of White Spotting in Dogs.
Baranowska Körberg, I., Sundström, E., Meadows, J., Pielberg, G., Gustafson, U. et al. (2014). PLOS ONE, vol. 9, ss. e104363- DOI
An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts.
Höppner, M., Lundquist, A., Pirun, M., Meadows, J., Zamani, N. et al. (2014). PLOS ONE, vol. 9, ss. e91172- DOI
Sheep: Domestication.
Meadows, J. (2014). I Encyclopedia of Global Archaeology, New York: Springer. ss. 6597-6600 DOI
A universal genomic coordinate translator for comparative genomics.
Zamani, N., Sundström, G., Meadows, J., Höppner, M., Dainat, J. et al. (2014). BMC Bioinformatics, vol. 15, ss. 227- DOI
Thorough investigation of a canine autoinflammatory disease (AID) syndrome confirms one main risk factor and suggests a modifier locus for amyloidosis.
Olsson, M., Tintle, L., Kierczak, M., Perloski, M., Tonomura, N. et al. (2013). PLOS ONE, vol. 8, ss. e75242- DOI
Unsupervised genome-wide recognition of local relationship patterns.
Zamani, N., Russell, P., Lantz, H., Hoeppner, M., Meadows, J. et al. (2013). BMC Genomics, vol. 14, ss. 347- DOI
The same ELA class II risk factors confer equine insect bite hypersensitivity in two distinct populations.
Andersson, L., Swinbune, J., Meadows, J., Brostrom, H., Eriksson, S. et al. (2012). Immunogenetics, vol. 64, ss. 201-208 DOI
Haplogroup relationships between domestic and wild sheep resolved using a mitogenome panel.
Meadows, J., Hiendleder, S., Kijas, J. (2011). Heredity, vol. 106, ss. 700-706 DOI
A Novel Unstable Duplication Upstream of HAS2 Predisposes to a Breed-Defining Skin Phenotype and a Periodic Fever Syndrome in Chinese Shar-Pei Dogs.
Olsson, M., Meadows, J., Truve, K., Pielberg, G., Puppo, F. et al. (2011). PLoS Genetics, vol. 7, ss. e1001332- DOI
Whole genome resequencing reveals loci under selection during chicken domestication.
Rubin, C., Zody, M., Eriksson, J., Meadows, J., Sherwood, E. et al. (2010). Nature, vol. 464, ss. 587-591 DOI
Copy number variation in intron 1 of SOX5 causes the Pea-comb phenotype in chickens.
Wright, D., Boije, H., Meadows, J., Bed'hom, B., Gourichon, D. et al. (2009). PLoS Genetics, vol. 5, ss. e1000512- DOI