Publikationer

Spatiotemporal variations in retrovirus-host interactions among Darwin’s finches

Hill, Jason; Lillie, Mette; Pettersson, Mats; Rubin, Carl-Johan et al.

Ingår i Nature Communications, 2022.

DOI för Spatiotemporal variations in retrovirus-host interactions among Darwin’s finches Ladda ner fulltext (pdf) av Spatiotemporal variations in retrovirus-host interactions among Darwin’s finches

Expansion of a retrovirus lineage in the koala genome

Lillie, Mette; Hill, Jason; Pettersson, Mats; Jern, Patric

Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2022.

DOI för Expansion of a retrovirus lineage in the koala genome Ladda ner fulltext (pdf) av Expansion of a retrovirus lineage in the koala genome

Transposon- and Genome Dynamics in the Fungal Genus Neurospora: Insights from Nearly Gapless Genome Assemblies

Nguyen, Diem; Peona, Valentina; Unneberg, Per; Suh, Alexander et al.

Ingår i Fungal Genetics Reports, 2022.

DOI för Transposon- and Genome Dynamics in the Fungal Genus Neurospora: Insights from Nearly Gapless Genome Assemblies Ladda ner fulltext (pdf) av Transposon- and Genome Dynamics in the Fungal Genus Neurospora: Insights from Nearly Gapless Genome Assemblies

Heterochiasmy and the establishment of gsdf as a novel sex determining gene in Atlantic halibut

Edvardsen, Rolf Brudvik; Wallerman, Ola; Furmanek, Tomasz; Kleppe, Lene et al.

Ingår i PLOS Genetics, 2022.

DOI för Heterochiasmy and the establishment of gsdf as a novel sex determining gene in Atlantic halibut Ladda ner fulltext (pdf) av Heterochiasmy and the establishment of gsdf as a novel sex determining gene in Atlantic halibut

ZBED6 binding motifs correlate with endogenous retroviruses and syncytin genes

Pettersson, Mats E.; Jern, Patric

Ingår i Virus Evolution, 2021.

DOI för ZBED6 binding motifs correlate with endogenous retroviruses and syncytin genes Ladda ner fulltext (pdf) av ZBED6 binding motifs correlate with endogenous retroviruses and syncytin genes

Activation of endogenous retroviruses during brain development causes an inflammatory response

Jönsson, Marie E.; Garza, Raquel; Sharma, Yogita; Petri, Rebecca et al.

Ingår i EMBO Journal, 2021.

DOI för Activation of endogenous retroviruses during brain development causes an inflammatory response Ladda ner fulltext (pdf) av Activation of endogenous retroviruses during brain development causes an inflammatory response

Functional differences between TSHR alleles associate with variation in spawning season in Atlantic herring

Chen, Junfeng; Bi, Huijuan; Pettersson, Mats; Sato, Daiki et al.

Ingår i Communications Biology, 2021.

DOI för Functional differences between TSHR alleles associate with variation in spawning season in Atlantic herring Ladda ner fulltext (pdf) av Functional differences between TSHR alleles associate with variation in spawning season in Atlantic herring

The avian W chromosome is a refugium for endogenous retroviruses with likely effects on female-biased mutational load and genetic incompatibilities

Peona, Valentina; Palacios-Gimenez, Octavio M.; Blommaert, Julie; Liu, Jing et al.

Ingår i Philosophical Transactions of the Royal Society of London. Biological Sciences, 2021.

DOI för The avian W chromosome is a refugium for endogenous retroviruses with likely effects on female-biased mutational load and genetic incompatibilities Ladda ner fulltext (pdf) av The avian W chromosome is a refugium for endogenous retroviruses with likely effects on female-biased mutational load and genetic incompatibilities

Characterization of the endogenous retrovirus insertion in CYP19A1 associated with henny feathering in chicken

Li, Jingyi; Davis, Brian W.; Jern, Patric; Dorshorst, Ben J. et al.

Ingår i Mobile DNA, 2019.

DOI för Characterization of the endogenous retrovirus insertion in CYP19A1 associated with henny feathering in chicken Ladda ner fulltext (pdf) av Characterization of the endogenous retrovirus insertion in CYP19A1 associated with henny feathering in chicken

Obituary: Jonas Blomberg (1944–2019)

Medstrand, Patrik; Jern, Patric

2019.

DOI för Obituary: Jonas Blomberg (1944–2019) Ladda ner fulltext (pdf) av Obituary: Jonas Blomberg (1944–2019)

Whole-Genome Analysis of Domestic Chicken Selection Lines Suggests Segregating Variation in ERV Makeups

Pettersson, Mats E.; Jern, Patric

Ingår i Genes, 2019.

DOI för Whole-Genome Analysis of Domestic Chicken Selection Lines Suggests Segregating Variation in ERV Makeups Ladda ner fulltext (pdf) av Whole-Genome Analysis of Domestic Chicken Selection Lines Suggests Segregating Variation in ERV Makeups

Whole-genome comparison of endogenous retrovirus segregation across wild and domestic host species populations

Rivas-Carrillo, Salvador Daniel; Pettersson, Mats; Rubin, Carl-Johan; Jern, Patric

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 11012-11017, 2018.

DOI för Whole-genome comparison of endogenous retrovirus segregation across wild and domestic host species populations Ladda ner fulltext (pdf) av Whole-genome comparison of endogenous retrovirus segregation across wild and domestic host species populations

Bridging gaps in transposable element research with single-molecule and single-cell technologies

Kutter, C; Jern, Patric; Suh, Alexander

Ingår i Mobile DNA, 2018.

DOI för Bridging gaps in transposable element research with single-molecule and single-cell technologies Ladda ner fulltext (pdf) av Bridging gaps in transposable element research with single-molecule and single-cell technologies

TRIM28 Controls a Gene Regulatory Network Based on Endogenous Retroviruses in Human Neural Progenitor Cells

Brattås, Per Ludvik; Jönsson, Marie E.; Fasching, Liana; Nelander Wahlestedt, Jenny et al.

Ingår i Cell reports, s. 1-11, 2017.

DOI för TRIM28 Controls a Gene Regulatory Network Based on Endogenous Retroviruses in Human Neural Progenitor Cells Ladda ner fulltext (pdf) av TRIM28 Controls a Gene Regulatory Network Based on Endogenous Retroviruses in Human Neural Progenitor Cells

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

Martínez Barrio, Álvaro; Lamichhaney, Sangeet; Fan, Guangyi; Rafati, Nima et al.

Ingår i eLIFE, 2016.

DOI för The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing Ladda ner fulltext (pdf) av The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

Pan-vertebrate comparative genomics unmasks retrovirus macroevolution

Hayward, Alexander; Cornwallis, Charlie K.; Jern, Patric

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 464-469, 2015.

DOI för Pan-vertebrate comparative genomics unmasks retrovirus macroevolution

Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)

Delhomme, N.; Sundström, Görel; Zamani, Neda; Lantz, Henrik et al.

Ingår i PLOS ONE, 2015.

DOI för Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies) Ladda ner fulltext (pdf) av Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)

cgmisc: Enhanced Genome-wide Association Analyses and Visualisation

Kierczak, Marcin; Jablonska, Jagoda; Forsberg, S. K.; Bianchi, Matteo et al.

Ingår i Bioinformatics, s. 3830-3831, 2015.

DOI för cgmisc: Enhanced Genome-wide Association Analyses and Visualisation Ladda ner fulltext (pdf) av cgmisc: Enhanced Genome-wide Association Analyses and Visualisation

TRIM28 Represses Transcription of Endogenous Retroviruses in Neural Progenitor Cells

Fasching, L.; Kapopoulou, A.; Sachdeva, R.; Petri, R. et al.

Ingår i Cell reports, s. 20-28, 2015.

DOI för TRIM28 Represses Transcription of Endogenous Retroviruses in Neural Progenitor Cells Ladda ner fulltext (pdf) av TRIM28 Represses Transcription of Endogenous Retroviruses in Neural Progenitor Cells

ZBED Evolution: Repeated Utilization of DNA Transposons as Regulators of Diverse Host Functions

Hayward, Alexander; Ghazal, Awaisa; Andersson, Göran; Andersson, Leif et al.

Ingår i PLOS ONE, s. e59940-, 2013.

DOI för ZBED Evolution: Repeated Utilization of DNA Transposons as Regulators of Diverse Host Functions Ladda ner fulltext (pdf) av ZBED Evolution: Repeated Utilization of DNA Transposons as Regulators of Diverse Host Functions

Unsupervised genome-wide recognition of local relationship patterns

Zamani, Neda; Russell, Pamela; Lantz, Henrik; Hoeppner, Marc et al.

Ingår i BMC Genomics, s. 347-, 2013.

DOI för Unsupervised genome-wide recognition of local relationship patterns Ladda ner fulltext (pdf) av Unsupervised genome-wide recognition of local relationship patterns

Broad-scale phylogenomics provides insights into retrovirus–host evolution

Hayward, Alexander; Grabherr, Manfred; Jern, Patric

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 20146-20151, 2013.

DOI för Broad-scale phylogenomics provides insights into retrovirus–host evolution

Strong signatures of selection in the domestic pig genome

Rubin, Carl-Johan; Megens, H. -J; Barrio, Alvaro Martinez; Maqbool, K. et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 19529-19536, 2012.

DOI för Strong signatures of selection in the domestic pig genome

Studies on the Restriction of Murine Leukemia Viruses by Mouse APOBEC3

Sanchez-Martinez, Silvia; Aloia, Amanda L.; Harvin, Demetria; Mirro, Jane et al.

Ingår i PLOS ONE, s. e38190-, 2012.

DOI för Studies on the Restriction of Murine Leukemia Viruses by Mouse APOBEC3 Ladda ner fulltext (pdf) av Studies on the Restriction of Murine Leukemia Viruses by Mouse APOBEC3

Analyses of pig genomes provide insight into porcine demography and evolution

Groenen, M. A.; Archibald, A. L.; Uenishi, H.; Tuggle, C. K. et al.

Ingår i Nature, s. 393-398, 2012.

DOI för Analyses of pig genomes provide insight into porcine demography and evolution

The First Sequenced Carnivore Genome Shows Complex Host-Endogenous Retrovirus Relationships

Barrio, Alvaro Martinez; Ekerljung, Marie; Jern, Patric; Benachenhou, Farid et al.

Ingår i PLOS ONE, s. e19832-, 2011.

DOI för The First Sequenced Carnivore Genome Shows Complex Host-Endogenous Retrovirus Relationships

Towards a retrovirus database, RetroBank

Blomberg, Jonas; Sperber, Göran. O.; Jern, Patric; Benachenhou, Farid

Ingår i Centennial Retrovirus Meeting, s. 19-22, 2010.

Endogenous non-retroviral RNA virus elements in mammalian genomes.

Horie, Masayuki; Honda, Tomoyuki; Suzuki, Yoshiyuki; Kobayashi, Yuki et al.

Ingår i Nature, s. 84-87, 2010.

DOI för Endogenous non-retroviral RNA virus elements in mammalian genomes.

Evolutionary Conservation of Orthoretroviral Long Terminal Repeats (LTRs) and ab initio Detection of Single LTRs in Genomic Data

Benachenhou, Farid; Jern, Patric; Oja, Merja; Sperber, Göran et al.

Ingår i PLos ONE, s. e5179-, 2009.

DOI för Evolutionary Conservation of Orthoretroviral Long Terminal Repeats (LTRs) and ab initio Detection of Single LTRs in Genomic Data Ladda ner fulltext (pdf) av Evolutionary Conservation of Orthoretroviral Long Terminal Repeats (LTRs) and ab initio Detection of Single LTRs in Genomic Data

Automated recognition of retroviral sequences in genomic data - RetroTector^©

Sperber, Göran O.; Airola, Tove; Jern, Patric; Blomberg, Jonas

Ingår i Nucleic Acids Research, s. 4964-4976, 2007.

DOI för Automated recognition of retroviral sequences in genomic data - RetroTector^©

Data mining of the dog genome reveals novel Canine Endogenous Retroviruses(CfERVs)

Martinez Barrio, Alvaro; Ekerljung, Marie; Jern, Patric; Benachenhou, Farid et al.